Interaction networks
This page visualizes parts of molecular interaction networks that link genes from the different datasets. Please consult the help page for a description of the different visualization styles and the ways to navigate the networks.
Input/panel gene networks
Visualization | Network | ID | Nodes | Edges | Input nodes | Input genes | Panel nodes | Panel genes | Categories | p-value | ClusterONE p-value | ClusterONE density | Top enrichment |
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bioplex,mentha,string_0.9 | filtered_n300_e341_i-p | 300 | 341 | 205 | 100144602, 100505495, 146880, 6854, 729867, ABCB1, ABCC3, ABCG1, ADCY4, AFAP1-AS1, AHSA2, AKR1C1, ANKRD29, ANKRD36, ATP8A1, BIRC3, C10orf90, C17orf72, C1orf63, C5, C5orf45, C6orf163, C7orf63, CAPG, CATSPER2, CCDC30, CCDC39, CCRL2, CD248, CD74, CD79B, CD83, CDA, CDH10, CDKL2, CDR1, COL24A1, COL6A6, CPM, CRYGS, CSF3, CXCL12, DCLK1, DDIT4L, DDX47, DIRAS3, DMTF1, DOCK6, EBLN2, EDNRA, EFNB2, EN1, ENPP4, EPHA4, EPHB2, ERV3-1, ESYT3, F2RL1, FABP4, FAM13A-AS1, FAM154B, FAM46C, FAM71F2, FGF7, FHL1, FIBIN, FNDC1, FOXL1, FOXS1, FRAS1, GABBR1, GABRE, GALNT14, GCKR, GDNF-AS1, GHRLOS, GNG11, GNRH1, GOLGA8A GOLGA8B, GOLGA8B, GPM6B, GREM1, GSAP, GSDMB, GSTT2 GSTT2B, GUCY1A2, H2AFY2, HERC2P3, HHIP, HMSD, HTR2A, ICAM2, IFITM1, IFNE, IRF6, ITGA10, JAG1, JUP, KCNAB1, KCNIP3, KCNJ2, KCNJ2-AS1, KCNN3, KCNQ1OT1, KIAA0895, KIAA1217, KIAA1522, KIAA1644, KLF5, KREMEN1, KRT17, LACC1, LHX4, LINC00174, LINC00856, LINC01133, LRRC32, LRRC37A LRRC37A2, LRRC61, LY6G5B, MALAT1, MARCH1, MATR3, MCAM, MEG3, MIR155HG, MMRN2, MSH5, MT1L, MT1X, MYCT1, NBEA, NEAT1, NEDD9, NEIL1, NKTR, NME5, NOX4, NPAS1, NPR3, NR2F1, P2RX6, PABPC1L, PCDH1, PCDH12, PCDH17, PCDHB7, PDZRN3, PER3, PFN1P8, PGF, PLA2G5, PLXNB3, PRKG2, PRRX2, PSMD6-AS2, RAB38, RBM47, RNF128, RNF212, RNFT2, RXFP1, SBSN, SCN8A, SEC31B, SEMA3D, SEMA7A, SFTA1P, SH2D2A, SH3BP5-AS1, SLC7A11, SLC7A11-AS1, SLC9A3R2, SLCO2B1, SNCA, SNCG, SP6, SPEG, SPP1, STARD4-AS1, SUGCT, SULF2, SYNC, TFAP2D, TMC3, TMEM229B, TMEM35, TNFRSF10C, TTC18, TTLL3, TTLL7, TXLNG2P, TXNRD1, UBAP1L, UBE2Q2P1, VAMP1, WDR17, WDR52, WTAPP1, WWC1, ZBED6CL, ZNF117, ZNF300, ZNF702P, ZNF83 | 96 | ADAM12, AKT2, ANGPTL4, APP, BACE1, BCL2, BMP1, CCND2, CD44, CDC42, CDK6, COL10A1, COL1A1, COL3A1, COL4A1, COL4A2, COL5A2, COL5A3, CTNNA3, CTNNBIP1, DES, DNAJB11, DNMT1, DNMT3A, DNMT3B, DSC2, DSG2, DSP, DUSP2, EIF4G1, ESR1, FBN1, FGA, FGB, FGG, FOS, GATA3, GPC3, GRN, GSK3B, HDAC4, HMGA2, IFNG, IL32, ITGA6, ITGB1, JUP, LAMC2, LMNA, LOX, LOXL2, LOXL4, MCL1, MICA, MMP15, MMP2, MMP24, MMP9, MTOR, MYCN, NASP, NCOA3, NID1, NKIRAS2, PDGFA, PDGFB, PDGFC, PDGFRA, PDGFRB, PER1, PIK3CG, PIK3R1, PKP2, PLN, PPP1R13B, PTEN, RAX, RYR2, S100B, SERPINH1, SFPQ, SIRT1, SNAI3, SP1, SPARC, TBX21, TCL1A, TDG, TET1, TET2, TGFB1, TGFB2, TGFB3, TMEM43, TTN, VEGFA | 0 | |||||
funsimbp | filtered_n299_e647_i-p | 299 | 647 | 204 | 100144602, 100505495, 146880, 729867, ABCB1, ABCC3, ABCG1, ADCY4, AFAP1-AS1, AHSA2, AKR1C1, ANKRD29, ANKRD36, ATP8A1, BIRC3, C10orf90, C17orf72, C1orf63, C5, C5orf45, C6orf163, C7orf63, CAPG, CATSPER2, CCDC30, CCDC39, CCRL2, CD248, CD74, CD79B, CD83, CDA, CDH10, CDKL2, CDR1, COL24A1, COL6A6, CPM, CRYGS, CSF3, CXCL12, DCLK1, DDIT4L, DDX47, DIRAS3, DMTF1, DOCK6, EBLN2, EDNRA, EFNB2, EN1, ENPP4, EPHA4, EPHB2, ERV3-1, ESYT3, F2RL1, FABP4, FAM13A-AS1, FAM154B, FAM46C, FAM71F2, FGF7, FHL1, FIBIN, FNDC1, FOXL1, FOXS1, FRAS1, GABBR1, GABRE, GALNT14, GCKR, GDNF-AS1, GHRLOS, GNG11, GNRH1, GOLGA8A GOLGA8B, GOLGA8B, GPM6B, GREM1, GSAP, GSDMB, GSTT2 GSTT2B, GUCY1A2, H2AFY2, HERC2P3, HHIP, HMSD, HTR2A, ICAM2, IFITM1, IFNE, IRF6, ITGA10, JAG1, JUP, KCNAB1, KCNIP3, KCNJ2, KCNJ2-AS1, KCNN3, KCNQ1OT1, KIAA0895, KIAA1217, KIAA1522, KIAA1644, KLF5, KREMEN1, KRT17, LACC1, LHX4, LINC00174, LINC00856, LINC01133, LRRC32, LRRC37A LRRC37A2, LRRC61, LY6G5B, MALAT1, MARCH1, MATR3, MCAM, MEG3, MIR155HG, MMRN2, MSH5, MT1L, MT1X, MYCT1, NBEA, NEAT1, NEDD9, NEIL1, NKTR, NME5, NOX4, NPAS1, NPR3, NR2F1, P2RX6, PABPC1L, PCDH1, PCDH12, PCDH17, PCDHB7, PDZRN3, PER3, PFN1P8, PGF, PLA2G5, PLXNB3, PRKG2, PRRX2, PSMD6-AS2, RAB38, RBM47, RNF128, RNF212, RNFT2, RXFP1, SBSN, SCN8A, SEC31B, SEMA3D, SEMA7A, SFTA1P, SH2D2A, SH3BP5-AS1, SLC7A11, SLC7A11-AS1, SLC9A3R2, SLCO2B1, SNCA, SNCG, SP6, SPEG, SPP1, STARD4-AS1, SUGCT, SULF2, SYNC, TFAP2D, TMC3, TMEM229B, TMEM35, TNFRSF10C, TTC18, TTLL3, TTLL7, TXLNG2P, TXNRD1, UBAP1L, UBE2Q2P1, VAMP1, WDR17, WDR52, WTAPP1, WWC1, ZBED6CL, ZNF117, ZNF300, ZNF702P, ZNF83 | 96 | ADAM12, AKT2, ANGPTL4, APP, BACE1, BCL2, BMP1, CCND2, CD44, CDC42, CDK6, COL10A1, COL1A1, COL3A1, COL4A1, COL4A2, COL5A2, COL5A3, CTNNA3, CTNNBIP1, DES, DNAJB11, DNMT1, DNMT3A, DNMT3B, DSC2, DSG2, DSP, DUSP2, EIF4G1, ESR1, FBN1, FGA, FGB, FGG, FOS, GATA3, GPC3, GRN, GSK3B, HDAC4, HMGA2, IFNG, IL32, ITGA6, ITGB1, JUP, LAMC2, LMNA, LOX, LOXL2, LOXL4, MCL1, MICA, MMP15, MMP2, MMP24, MMP9, MTOR, MYCN, NASP, NCOA3, NID1, NKIRAS2, PDGFA, PDGFB, PDGFC, PDGFRA, PDGFRB, PER1, PIK3CG, PIK3R1, PKP2, PLN, PPP1R13B, PTEN, RAX, RYR2, S100B, SERPINH1, SFPQ, SIRT1, SNAI3, SP1, SPARC, TBX21, TCL1A, TDG, TET1, TET2, TGFB1, TGFB2, TGFB3, TMEM43, TTN, VEGFA | 0 |
Clusters in full networks
Visualization | Network | ID | Nodes | Edges | Input nodes | Input genes | Panel nodes | Panel genes | Categories | p-value | ClusterONE p-value | ClusterONE density | Top enrichment |
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bioplex,mentha,string_0.9 | cluster_clusterone_c0036_n34_e345 | 34 | 345 | 1 | NR2F1 | 1 | SP1 | 0 | 5.925108e-02 | 0.996396 | 0.615 |
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bioplex,mentha,string_0.9 | cluster_clusterone_c0065_n10_e27 | 10 | 27 | 1 | ITGA10 | 1 | ITGB1 | 0 | 5.701806e-03 | 0.989602 | 0.6 |
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bioplex,mentha,string_0.9 | cluster_clusterone_c0128_n10_e28 | 10 | 28 | 1 | SPP1 | 2 | PDGFA, PDGFB | 0 | 1.758171e-04 | 0.992392 | 0.6222 |
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bioplex,mentha,string_0.9 | cluster_clusterone_c0129_n48_e602 | 48 | 602 | 2 | C5, CXCL12 | 0 | 0 | 1.073501e-01 | 0.034511 | 0.5337 |
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bioplex,mentha,string_0.9 | cluster_clusterone_c0163_n12_e34 | 12 | 34 | 2 | GSAP, JAG1 | 0 | 0 | 8.235375e-03 | 0.988167 | 0.5152 |
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bioplex,mentha,string_0.9 | cluster_clusterone_c0219_n59_e926 | 59 | 926 | 4 | EDNRA, F2RL1, GNRH1, HTR2A | 0 | 0 | 4.936742e-03 | 0.0138312 | 0.5412 |
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bioplex,mentha,string_0.9 | cluster_clusterone_c0273_n34_e419 | 34 | 419 | 2 | IFITM1, IRF6 | 0 | 0 | 5.925108e-02 | 0.531829 | 0.7469 |
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bioplex,mentha,string_0.9 | cluster_clusterone_c0368_n6_e9 | 6 | 9 | 1 | SYNC | 1 | DES | 0 | 1.959976e-03 | 0.998089 | 0.6 |
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bioplex,mentha,string_0.9 | cluster_clusterone_c0406_n15_e63 | 15 | 63 | 2 | CD74, MARCH1 | 0 | 0 | 1.280449e-02 | 0.994562 | 0.6 |
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bioplex,mentha,string_0.9 | cluster_clusterone_c0422_n5_e6 | 5 | 6 | 2 | 6854, DCLK1 | 0 | 0 | 1.316762e-03 | 0.991847 | 0.6 |
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bioplex,mentha,string_0.9 | cluster_clusterone_c0434_n5_e6 | 5 | 6 | 1 | DMTF1 | 1 | CCND2 | 0 | 1.316762e-03 | 0.996774 | 0.6 |
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bioplex,mentha,string_0.9 | cluster_clusterone_c0502_n33_e503 | 33 | 503 | 1 | COL24A1 | 6 | COL10A1, COL3A1, COL4A1, COL4A2, COL5A2, COL5A3 | 0 | 8.836109e-08 | 1.13627e-09 | 0.9527 |
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bioplex,mentha,string_0.9 | cluster_clusterone_c0515_n11_e34 | 11 | 34 | 1 | JUP | 5 | DSC2, DSG2, DSP, JUP, PKP2 | 0 | 8.970798e-08 | 0.999966 | 0.6182 |
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bioplex,mentha,string_0.9 | cluster_clusterone_c0539_n15_e65 | 15 | 65 | 1 | PER3 | 1 | PER1 | 0 | 1.280449e-02 | 0.999589 | 0.619 |
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bioplex,mentha,string_0.9 | cluster_clusterone_c0703_n16_e74 | 16 | 74 | 3 | EFNB2, EPHA4, EPHB2 | 0 | 0 | 7.790938e-04 | 0.999869 | 0.6167 |
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bioplex,mentha,string_0.9 | cluster_clusterone_c0997_n4_e4 | 4 | 4 | 2 | PCDH12, PCDH17 | 0 | 0 | 7.961768e-04 | 0.990291 | 0.6667 |
Clusters in input/panel gene networks
Visualization | Network | ID | Nodes | Edges | Input nodes | Input genes | Panel nodes | Panel genes | Categories | p-value | ClusterONE p-value | ClusterONE density | Top enrichment |
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funsimbp | filtered_n299_e647_i-p_cluster_clusterone_c0002_n14_e46 | 14 | 46 | 9 | FOXL1, GNRH1, LHX4, NPAS1, NR2F1, WWC1, ZNF117, ZNF300, ZNF83 | 5 | FOS, SNAI3, SP1, TDG, TET1 | 0 | 1.000000e+00 | 0.0279689 | 0.5055 |
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funsimbp | filtered_n299_e647_i-p_cluster_clusterone_c0003_n4_e3 | 4 | 3 | 3 | CDKL2, CSF3, NOX4 | 1 | TGFB1 | 0 | 1.000000e+00 | 0.267852 | 0.5 |
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funsimbp | filtered_n299_e647_i-p_cluster_clusterone_c0004_n4_e3 | 4 | 3 | 3 | EPHB2, NME5, SEMA3D | 1 | ANGPTL4 | 0 | 1.000000e+00 | 0.14407 | 0.5 | ||
funsimbp | filtered_n299_e647_i-p_cluster_clusterone_c0005_n4_e3 | 4 | 3 | 4 | ABCB1, FABP4, GABRE, TMC3 | 0 | 0 | 1.000000e+00 | 0.14407 | 0.5 | |||
funsimbp | filtered_n299_e647_i-p_cluster_clusterone_c0006_n4_e3 | 4 | 3 | 3 | FHL1, IFNE, SLC9A3R2 | 1 | BCL2 | 0 | 1.000000e+00 | 0.434331 | 0.5 | ||
funsimbp | filtered_n299_e647_i-p_cluster_clusterone_c0007_n5_e5 | 5 | 5 | 4 | CD79B, CD83, IFITM1, IFNE | 1 | GATA3 | 0 | 1.000000e+00 | 0.414406 | 0.5 |
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funsimbp | filtered_n299_e647_i-p_cluster_clusterone_c0008_n4_e3 | 4 | 3 | 1 | NEIL1 | 3 | MCL1, SIRT1, TDG | 0 | 1.000000e+00 | 0.851258 | 0.5 |
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funsimbp | filtered_n299_e647_i-p_cluster_clusterone_c0009_n4_e3 | 4 | 3 | 1 | CD74 | 3 | IL32, MTOR, PIK3CG | 0 | 1.000000e+00 | 0.975734 | 0.5 | ||
funsimbp | filtered_n299_e647_i-p_cluster_clusterone_c0010_n13_e36 | 13 | 36 | 3 | COL6A6, ICAM2, ITGA10 | 10 | CD44, COL10A1, COL1A1, COL3A1, COL5A2, COL5A3, ITGA6, ITGB1, LAMC2, NID1 | 0 | 1.000000e+00 | 0.0175895 | 0.4615 |
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funsimbp | filtered_n299_e647_i-p_cluster_clusterone_c0011_n5_e5 | 5 | 5 | 3 | GSAP, HMSD, PABPC1L | 2 | APP, BACE1 | 0 | 1.000000e+00 | 0.335201 | 0.5 |
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funsimbp | filtered_n299_e647_i-p_cluster_clusterone_c0012_n5_e5 | 5 | 5 | 3 | GREM1, KREMEN1, MMRN2 | 2 | CDC42, DES | 0 | 1.000000e+00 | 0.773951 | 0.5 | ||
funsimbp | filtered_n299_e647_i-p_cluster_clusterone_c0013_n4_e3 | 4 | 3 | 1 | DMTF1 | 3 | CDK6, TET1, TET2 | 0 | 1.000000e+00 | 0.949204 | 0.5 |
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funsimbp | filtered_n299_e647_i-p_cluster_clusterone_c0014_n8_e14 | 8 | 14 | 2 | COL24A1, SPEG | 6 | CCND2, LOX, PDGFB, PDGFRA, TGFB1, TGFB2 | 0 | 1.000000e+00 | 0.756642 | 0.5 | ||
funsimbp | filtered_n299_e647_i-p_cluster_clusterone_c0015_n8_e16 | 8 | 16 | 3 | CDH10, JUP, SYNC | 6 | CTNNA3, DSC2, DSG2, DSP, JUP, PKP2 | 0 | 1.000000e+00 | 0.0118485 | 0.5714 |
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funsimbp | filtered_n299_e647_i-p_cluster_clusterone_c0016_n4_e3 | 4 | 3 | 3 | DIRAS3, F2RL1, FGF7 | 1 | NKIRAS2 | 0 | 1.000000e+00 | 0.732148 | 0.5 |
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funsimbp | filtered_n299_e647_i-p_cluster_clusterone_c0017_n6_e8 | 6 | 8 | 6 | ADCY4, EDNRA, GABBR1, GNG11, HTR2A, RXFP1 | 0 | 0 | 1.000000e+00 | 0.0434913 | 0.5333 |
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funsimbp | filtered_n299_e647_i-p_cluster_clusterone_c0018_n9_e19 | 9 | 19 | 7 | ABCC3, ATP8A1, ESYT3, GPM6B, RAB38, SEC31B, TMC3 | 2 | NASP, PIK3R1 | 0 | 1.000000e+00 | 0.0120418 | 0.5278 |
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funsimbp | filtered_n299_e647_i-p_cluster_clusterone_c0019_n4_e3 | 4 | 3 | 2 | KREMEN1, SEMA7A | 2 | ADAM12, GSK3B | 0 | 1.000000e+00 | 0.892262 | 0.5 | ||
funsimbp | filtered_n299_e647_i-p_cluster_clusterone_c0020_n4_e3 | 4 | 3 | 4 | BIRC3, CD74, HTR2A, TNFRSF10C | 0 | 0 | 1.000000e+00 | 0.892262 | 0.5 | |||
funsimbp | filtered_n299_e647_i-p_cluster_clusterone_c0021_n10_e23 | 10 | 23 | 1 | COL6A6 | 9 | COL10A1, COL1A1, COL3A1, COL4A1, COL4A2, COL5A2, COL5A3, MMP15, MMP2 | 0 | 1.000000e+00 | 0.0589289 | 0.5111 |
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funsimbp | filtered_n299_e647_i-p_cluster_clusterone_c0023_n10_e23 | 10 | 23 | 9 | ABCC3, ABCG1, ATP8A1, ESYT3, GPM6B, RAB38, SEC31B, SLCO2B1, TMC3 | 1 | NASP | 0 | 1.000000e+00 | 0.0257381 | 0.5111 |
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funsimbp | filtered_n299_e647_i-p_cluster_clusterone_c0024_n4_e3 | 4 | 3 | 2 | BIRC3, TNFRSF10C | 2 | ESR1, NCOA3 | 0 | 1.000000e+00 | 0.949204 | 0.5 |
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funsimbp | filtered_n299_e647_i-p_cluster_clusterone_c0025_n5_e5 | 5 | 5 | 1 | DMTF1 | 4 | CCND2, CDK6, HMGA2, TET2 | 0 | 1.000000e+00 | 0.988183 | 0.5 |
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funsimbp | filtered_n299_e647_i-p_cluster_clusterone_c0026_n8_e14 | 8 | 14 | 3 | COL24A1, CRYGS, LRRC32 | 5 | LOX, PPP1R13B, TGFB1, TGFB2, TGFB3 | 0 | 1.000000e+00 | 0.727709 | 0.5 |
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funsimbp | filtered_n299_e647_i-p_cluster_clusterone_c0028_n4_e3 | 4 | 3 | 1 | DCLK1 | 3 | DUSP2, PTEN, S100B | 0 | 1.000000e+00 | 0.814074 | 0.5 | ||
funsimbp | filtered_n299_e647_i-p_cluster_clusterone_c0029_n11_e29 | 11 | 29 | 6 | DOCK6, FGF7, KIAA1217, MMRN2, PGF, SH2D2A | 5 | PDGFA, PDGFB, PDGFC, PDGFRA, PDGFRB | 0 | 1.000000e+00 | 0.0127596 | 0.5273 |
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funsimbp | filtered_n299_e647_i-p_cluster_clusterone_c0030_n4_e3 | 4 | 3 | 3 | KRT17, MATR3, SYNC | 1 | EIF4G1 | 0 | 1.000000e+00 | 0.440467 | 0.5 |
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funsimbp | filtered_n299_e647_i-p_cluster_clusterone_c0031_n4_e3 | 4 | 3 | 3 | GUCY1A2, KLF5, SPEG | 1 | VEGFA | 0 | 1.000000e+00 | 0.937953 | 0.5 | ||
funsimbp | filtered_n299_e647_i-p_cluster_clusterone_c0033_n4_e3 | 4 | 3 | 1 | MATR3 | 3 | AKT2, EIF4G1, PPP1R13B | 0 | 1.000000e+00 | 0.907062 | 0.5 | ||
funsimbp | filtered_n299_e647_i-p_cluster_clusterone_c0034_n4_e3 | 4 | 3 | 2 | FOXS1, NEIL1 | 2 | MCL1, SIRT1 | 0 | 1.000000e+00 | 0.937953 | 0.5 | ||
funsimbp | filtered_n299_e647_i-p_cluster_clusterone_c0035_n11_e28 | 11 | 28 | 4 | DOCK6, FGF7, KIAA1217, SH2D2A | 7 | LOX, NKIRAS2, PDGFA, PDGFB, PDGFC, PDGFRA, PDGFRB | 0 | 1.000000e+00 | 0.00877207 | 0.5091 |
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funsimbp | filtered_n299_e647_i-p_cluster_clusterone_c0036_n6_e8 | 6 | 8 | 6 | C5, CCRL2, CXCL12, EDNRA, F2RL1, RXFP1 | 0 | 0 | 1.000000e+00 | 0.467403 | 0.5333 |
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funsimbp | filtered_n299_e647_i-p_cluster_clusterone_c0039_n4_e3 | 4 | 3 | 1 | CPM | 3 | GPC3, MMP15, MMP2 | 0 | 1.000000e+00 | 0.437184 | 0.5 |